GRAPEVNE - Graphical Analytical Pipeline Development Environment for Infectious Diseases
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Date
2025-05-29
Authors
Brittain, John-Stuart
Inward, Rhys
Mwanyika, Gaspary
Tegally, Houriiyah
Githinji, George
Tsui , Joseph
Gutierrez, Bernardo
Huynh, Tuyen
Kifle Tessema, Sofonias
McCrone, John T.
Journal Title
Journal ISSN
Volume Title
Publisher
Wellcome Open Research
Abstract
The increase in volume and diversity of relevant data on infectious diseases and their drivers provides opportunities to generate new scientific insights that can support ‘real-time’ decision-making in public health across outbreak contexts and enhance pandemic preparedness. However, utilising the wide array of clinical, genomic, epidemiological, and spatial data collected globally is difficult due to differences in data preprocessing, data science capacity, and access to hardware and cloud resources. To facilitate large-scale and routine analyses of infectious disease data at the local level (i.e. without sharing data across borders), we developed GRAPEVNE (Graphical Analytical Pipeline Development Environment), a platform enabling the construction of modular pipelines designed for complex and repetitive data analysis workflows through an intuitive graphical interface
Description
This Journal article was published by Wellcome Open Research in 2025